PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000285.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 257aa    MW: 28840.5 Da    PI: 5.2451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000285.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.8e-20102152255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Itr_sc000285.1_g00001.1 102 HYRGVRQRP-WGKFAAEIRDP---NkKGARVWLGTFDTAVEAAKAYDRAAFKLRG 152
                              7********.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.2E-33101161IPR001471AP2/ERF domain
CDDcd000182.07E-32102160No hitNo description
SMARTSM003801.1E-39102166IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-23102162IPR016177DNA-binding domain
PROSITE profilePS5103224.329102160IPR001471AP2/ERF domain
PfamPF008472.0E-14102152IPR001471AP2/ERF domain
PRINTSPR003679.8E-14103114IPR001471AP2/ERF domain
PRINTSPR003679.8E-14142162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGSPAEVSAL EFIKHHLFDD VFPEIFCDNQ SPSSSESCVS ELKNDEFFTE SDLFEIESKP  60
QVIISPPRKF NGRKPNLNIA VPQPQVKVKV QVVQDSGDAN RHYRGVRQRP WGKFAAEIRD  120
PNKKGARVWL GTFDTAVEAA KAYDRAAFKL RGSKAILNFP LEVENFRQGN EAPPPPVETG  180
RKRRRDSDAD DEVVITKEVK TELSEESDRL YAAVAATPLT PSSWMTVWDY NDINGGVFEM  240
PPLSPLSPNL FNYGIKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-31100165368ATERF1
3gcc_A2e-31100165368ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180184RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483897.11e-73PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ404781e-72ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLE3VVS13e-72E3VVS1_PETHY; Ethylene-responsive-element-binding factor 12
STRINGSolyc03g093550.1.11e-69(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-43ERF family protein